/Docs/G/GA4GH/WiP/DUO/DataItem/0.md
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(Sec = (Ti = DUO/src/ontology/duo.csv)

(sec =
  1. (ConsentCode.Sec = (ConsentCode.Ti = Consent Code)

    (ConsentCode.sec =
    1. (ConsentCode.DS.Sec = (ConsentCode.DS.Ti = (ConsentCode.DS.shorthand = DS)
      )

      (ConsentCode.DS.sec =
      1. id: (ConsentCode.DS.id = DUO:0000007)
      2. shorthand: (ConsentCode.DS.shorthand = DS)
      3. label: (ConsentCode.DS.label = disease specific research)
      4. description: (ConsentCode.DS.description = This primary category consent code indicates that use is allowed provided it is related to the specified disease.)
      )
      )
    2. (ConsentCode.GRU-CC.Sec = (ConsentCode.GRU-CC.Ti = (ConsentCode.GRU-CC.shorthand = GRU-CC)
      )

      (ConsentCode.GRU-CC.sec =
      1. id: (ConsentCode.GRU-CC.id = DUO:0000005)
      2. shorthand: (ConsentCode.GRU-CC.shorthand = GRU-CC)
      3. label: (ConsentCode.GRU-CC.label = general research use and clinical care)
      4. description: (ConsentCode.GRU-CC.description = This primary category consent code indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.)
      )
      )
    3. (ConsentCode.GRU.Sec = (ConsentCode.GRU.Ti = (ConsentCode.GRU.shorthand = GRU)
      )

      (ConsentCode.GRU.sec =
      1. id: (ConsentCode.GRU.id = DUO:0000042)
      2. shorthand: (ConsentCode.GRU.shorthand = GRU)
      3. label: (ConsentCode.GRU.label = general research use)
      4. description: (ConsentCode.GRU.description = This primary category consent code indicates that use is allowed for general research use for any research purpose.)
      )
      )
    4. (ConsentCode.GSO.Sec = (ConsentCode.GSO.Ti = (ConsentCode.GSO.shorthand = GSO)
      )

      (ConsentCode.GSO.sec =
      1. id: (ConsentCode.GSO.id = DUO:0000016)
      2. shorthand: (ConsentCode.GSO.shorthand = GSO)
      3. label: (ConsentCode.GSO.label = genetic studies only)
      4. description: (ConsentCode.GSO.description = This secondary category consent code indicates that use is limited to genetic studies only (i.e., no phenotype-only research))
      )
      )
    5. (ConsentCode.HMB.Sec = (ConsentCode.HMB.Ti = (ConsentCode.HMB.shorthand = HMB)
      )

      (ConsentCode.HMB.sec =
      1. id: (ConsentCode.HMB.id = DUO:0000006)
      2. shorthand: (ConsentCode.HMB.shorthand = HMB)
      3. label: (ConsentCode.HMB.label = health or medical or biomedical research)
      4. description: (ConsentCode.HMB.description = This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.)
      )
      )
    6. (ConsentCode.NRES.Sec = (ConsentCode.NRES.Ti = (ConsentCode.NRES.shorthand = NRES)
      )

      (ConsentCode.NRES.sec =
      1. id: (ConsentCode.NRES.id = DUO:0000004)
      2. shorthand: (ConsentCode.NRES.shorthand = NRES)
      3. label: (ConsentCode.NRES.label = no restriction)
      4. description: (ConsentCode.NRES.description = This consent code primary category indicates there is no restriction on use.)
      )
      )
    7. (ConsentCode.POA.Sec = (ConsentCode.POA.Ti = (ConsentCode.POA.shorthand = POA)
      )

      (ConsentCode.POA.sec =
      1. id: (ConsentCode.POA.id = DUO:0000011)
      2. shorthand: (ConsentCode.POA.shorthand = POA)
      3. label: (ConsentCode.POA.label = population origins or ancestry research)
      4. description: (ConsentCode.POA.description = This primary category consent code indicates that use of the data is limited to the study of population origins or ancestry.)
      )
      )
    8. (ConsentCode.RS.Sec = (ConsentCode.RS.Ti = (ConsentCode.RS.shorthand = RS)
      )

      (ConsentCode.RS.sec =
      1. id: (ConsentCode.RS.id = DUO:0000012)
      2. shorthand: (ConsentCode.RS.shorthand = RS)
      3. label: (ConsentCode.RS.label = research specific restrictions)
      4. description: (ConsentCode.RS.description = This secondary category consent code indicates that use is limited to studies of a certain research type.)
      )
      )
    9. (ConsentCode.RU.Sec = (ConsentCode.RU.Ti = (ConsentCode.RU.shorthand = RU)
      )

      (ConsentCode.RU.sec =
      1. id: (ConsentCode.RU.id = DUO:0000014)
      2. shorthand: (ConsentCode.RU.shorthand = RU)
      3. label: (ConsentCode.RU.label = research use only)
      4. description: (ConsentCode.RU.description = This secondary category consent code indicates that use is limited to research purposes (e.g., does not include its use in clinical care).)
      )
      )
    )
    )
  2. (DataUse.Sec = (DataUse.Ti = Data Use)

    (DataUse.sec =
    1. (DataUse.COL.Sec = (DataUse.COL.Ti = (DataUse.COL.shorthand = COL)
      )

      (DataUse.COL.sec =
      1. id: (DataUse.COL.id = DUO:0000020)
      2. shorthand: (DataUse.COL.shorthand = COL)
      3. label: (DataUse.COL.label = collaboration required)
      4. description: (DataUse.COL.description = This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s).)
      )
      )
    2. (DataUse.GS-XX.Sec = (DataUse.GS-XX.Ti = (DataUse.GS-XX.shorthand = GS-{XX})
      )

      (DataUse.GS-XX.sec =
      1. id: (DataUse.GS-XX.id = DUO:0000022)
      2. shorthand: (DataUse.GS-XX.shorthand = GS-{XX})
      3. label: (DataUse.GS-XX.label = geographical restriction)
      4. description: (DataUse.GS-XX.description = This requirement indicates that use is limited to within a specific geographic region.)
      )
      )
    3. (DataUse.IRB.Sec = (DataUse.IRB.Ti = (DataUse.IRB.shorthand = IRB)
      )

      (DataUse.IRB.sec =
      1. id: (DataUse.IRB.id = DUO:0000021)
      2. shorthand: (DataUse.IRB.shorthand = IRB)
      3. label: (DataUse.IRB.label = ethics approval required)
      4. description: (DataUse.IRB.description = This requirement indicates that the requestor must provide documentation of local IRB/ERB approval.)
      )
      )
    4. (DataUse.IS.Sec = (DataUse.IS.Ti = (DataUse.IS.shorthand = IS)
      )

      (DataUse.IS.sec =
      1. id: (DataUse.IS.id = DUO:0000028)
      2. shorthand: (DataUse.IS.shorthand = IS)
      3. label: (DataUse.IS.label = institution specific restriction)
      4. description: (DataUse.IS.description = This requirement indicates that use is limited to use within an approved institution.)
      )
      )
    5. (DataUse.MOR-XX.Sec = (DataUse.MOR-XX.Ti = (DataUse.MOR-XX.shorthand = MOR-{XX})
      )

      (DataUse.MOR-XX.sec =
      1. id: (DataUse.MOR-XX.id = DUO:0000024)
      2. shorthand: (DataUse.MOR-XX.shorthand = MOR-{XX})
      3. label: (DataUse.MOR-XX.label = publication moratorium)
      4. description: (DataUse.MOR-XX.description = This requirement indicates that requestor agrees not to publish results of studies until a specific date)
      )
      )
    6. (DataUse.NPU.Sec = (DataUse.NPU.Ti = (DataUse.NPU.shorthand = NPU)
      )

      (DataUse.NPU.sec =
      1. id: (DataUse.NPU.id = DUO:0000018)
      2. shorthand: (DataUse.NPU.shorthand = NPU)
      3. label: (DataUse.NPU.label = not for profit use only)
      4. description: (DataUse.NPU.description = This requirement indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.)
      )
      )
    7. (DataUse.PS.Sec = (DataUse.PS.Ti = (DataUse.PS.shorthand = PS)
      )

      (DataUse.PS.sec =
      1. id: (DataUse.PS.id = DUO:0000027)
      2. shorthand: (DataUse.PS.shorthand = PS)
      3. label: (DataUse.PS.label = project specific restriction)
      4. description: (DataUse.PS.description = This requirement indicates that use is limited to use within an approved project.)
      )
      )
    8. (DataUse.PUB.Sec = (DataUse.PUB.Ti = (DataUse.PUB.shorthand = PUB)
      )

      (DataUse.PUB.sec =
      1. id: (DataUse.PUB.id = DUO:0000019)
      2. shorthand: (DataUse.PUB.shorthand = PUB)
      3. label: (DataUse.PUB.label = publication required)
      4. description: (DataUse.PUB.description = This requirement indicates that requestor agrees to make results of studies using the data available to the larger scientific community.)
      )
      )
    9. (DataUse.RTN.Sec = (DataUse.RTN.Ti = (DataUse.RTN.shorthand = RTN)
      )

      (DataUse.RTN.sec =
      1. id: (DataUse.RTN.id = DUO:0000029)
      2. shorthand: (DataUse.RTN.shorthand = RTN)
      3. label: (DataUse.RTN.label = return to database or resource)
      4. description: (DataUse.RTN.description = This requirement indicates that the requestor must return derived/enriched data to the database/resource.)
      )
      )
    10. (DataUse.TS-XX.Sec = (DataUse.TS-XX.Ti = (DataUse.TS-XX.shorthand = TS-{XX})
      )

      (DataUse.TS-XX.sec =
      1. id: (DataUse.TS-XX.id = DUO:0000025)
      2. shorthand: (DataUse.TS-XX.shorthand = TS-{XX})
      3. label: (DataUse.TS-XX.label = time limit on use)
      4. description: (DataUse.TS-XX.description = This requirement indicates that use is approved for a specific number of months.)
      )
      )
    11. (DataUse.US.Sec = (DataUse.US.Ti = (DataUse.US.shorthand = US)
      )

      (DataUse.US.sec =
      1. id: (DataUse.US.id = DUO:0000026)
      2. shorthand: (DataUse.US.shorthand = US)
      3. label: (DataUse.US.label = user specific restriction)
      4. description: (DataUse.US.description = This requirement indicates that use is limited to use by approved users.)
      )
      )
    )
    )
)
)